Overview

IDAllelesLocationGenome BuildSource
rs10484554C/Tchr6: 3130677838dbsnp146
rs10484554C/T chr6: 31274555 37dbsnp146_grch37
rs10484554A/G chr6: 31306778 38ImmunoChip
rs10484554A/G chr6: 31274555 37ImmunoChip
rs10484554A/G chr6: 31382534 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs116992034rs116168013rs10484554132
rs78058232rs10484554rs10484554136
rs17463064rs10484554rs10484554123
rs116168013rs10484554rs10484554136
rs57815347rs10484554rs10484554130
rs111540800rs78058232rs10484554135

Criteria

rs10484554 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs10484554 as derived from dbSNP:
  • in 3prime gene region
  • has reference
  • has non-synonymous missense

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs10484554, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.