Overview

IDAllelesLocationGenome BuildSource
rs1077667C/Tchr19: 666896138dbsnp146
rs1077667C/T chr19: 6668972 37dbsnp146_grch37
rs1077667T/C chr19: 6668961 38ImmunoChip
rs1077667T/C chr19: 6668972 37ImmunoChip
rs1077667T/C chr19: 6619972 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs61059265rs1077667rs1077667130
rs386515118rs1077667rs1077667142
rs4380149rs1077667rs1077667123
rs17704116rs1077667rs1077667123

Criteria

rs1077667 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs1077667 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  TNFSF14 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs1077667, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.