Overview

IDAllelesLocationGenome BuildSource
rs10936599C/Tchr3: 16977431338dbsnp146
rs10936599C/T chr3: 169492101 37dbsnp146_grch37
rs10936599A/G chr3: 169774313 38ImmunoChip
rs10936599A/G chr3: 169492101 37ImmunoChip
rs10936599A/G chr3: 170974795 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60621786rs10936599rs10936599130

Criteria

No results found

Functional Information

Gene function properties for rs10936599 as derived from dbSNP:
  • in 5prime utr
  • has synonymous
  • has reference
Gene(s) at location of variation:  MYNN 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs10936599, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.