Overview

IDAllelesLocationGenome BuildSource
rs11203203G/Achr21: 4241607738dbsnp146
rs11203203G/A chr21: 43836186 37dbsnp146_grch37
imm_21_42709255T/C chr21: 42416077 38ImmunoChip
imm_21_42709255T/C chr21: 43836186 37ImmunoChip
imm_21_42709255T/C chr21: 42709255 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs57097873rs11203203rs11203203130
rs56456405rs11203203rs11203203130

Criteria

rs11203203 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs11203203 as derived from dbSNP:
  • in intron
  • in 5prime utr
Gene(s) at location of variation:  UBASH3A 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs11203203, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.