Overview

IDAllelesLocationGenome BuildSource
rs1128905T/Cchr9: 13635938738dbsnp146
rs1128905T/C chr9: 139253839 37dbsnp146_grch37
imm_9_138373660T/C chr9: 136359387 38ImmunoChip
imm_9_138373660T/C chr9: 139253839 37ImmunoChip
imm_9_138373660T/C chr9: 138373660 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs3186254rs1128905rs1128905106
rs17530648rs1128905rs1128905123
rs3812551rs1128905rs1128905108
rs61322855rs1128905rs1128905130

Criteria

rs1128905 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs1128905 as derived from dbSNP:
  • in 3prime utr
Gene(s) at location of variation:  GPSM1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs1128905, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.