Overview

IDAllelesLocationGenome BuildSource
rs1131265G/Cchr3: 11950360938dbsnp146
rs1131265G/C chr3: 119222456 37dbsnp146_grch37
imm_3_120705146G/C chr3: 119503609 38ImmunoChip
imm_3_120705146G/C chr3: 119222456 37ImmunoChip
imm_3_120705146G/C chr3: 120705146 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs1405013rs1131265rs1131265102
rs56525909rs1131265rs1131265130
rs3191006rs1131265rs1131265108
rs11539375rs1131265rs1131265126

Criteria

rs1131265 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs1131265 as derived from dbSNP:
  • has synonymous
  • has reference
Gene(s) at location of variation:  TIMMDC1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs1131265, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.