Overview

IDAllelesLocationGenome BuildSource
rs11676348C/Tchr2: 21814542338dbsnp146
rs11676348C/T chr2: 219010146 37dbsnp146_grch37
rs11676348A/G chr2: 218145423 38ImmunoChip
rs11676348A/G chr2: 219010146 37ImmunoChip
rs11676348A/G chr2: 218718391 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17844747rs11676348rs11676348126
rs56441072rs11676348rs11676348130
rs56873447rs11676348rs11676348130

Criteria

rs11676348 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs11676348 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs11676348, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.