Overview

IDAllelesLocationGenome BuildSource
rs11755393A/Gchr6: 3485685938dbsnp146
rs11755393A/G chr6: 34824636 37dbsnp146_grch37
imm_6_34932614A/G chr6: 34856859 38ImmunoChip
imm_6_34932614A/G chr6: 34824636 37ImmunoChip
imm_6_34932614A/G chr6: 34932614 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs52828489rs11755393rs11755393128

Criteria

rs11755393 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs11755393 as derived from dbSNP:
  • has reference
  • has non-synonymous missense
Gene(s) at location of variation:  UHRF1BP1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs11755393, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.