Overview

IDAllelesLocationGenome BuildSource
rs12242110A/Gchr10: 3524676738dbsnp146
rs12242110A/G chr10: 35535695 37dbsnp146_grch37
imm_10_35575701T/C chr10: 35246767 38ImmunoChip
imm_10_35575701T/C chr10: 35535695 37ImmunoChip
imm_10_35575701T/C chr10: 35575701 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs58433310rs12242110rs12242110130

Criteria

rs12242110 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs12242110 as derived from dbSNP:
  • in 5prime gene region
Gene(s) at location of variation:  CCNY 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs12242110, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.