Overview

IDAllelesLocationGenome BuildSource
rs1250552A/Gchr10: 7929827038dbsnp146
rs1250552A/G chr10: 81058027 37dbsnp146_grch37
imm_10_80728033A/G chr10: 79298270 38ImmunoChip
imm_10_80728033A/G chr10: 81058027 37ImmunoChip
imm_10_80728033A/G chr10: 80728033 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17567183rs1250552rs1250552123
rs57147751rs1250552rs1250552130

Criteria

rs1250552 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs1250552 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  ZMIZ1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs1250552, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.