Overview

IDAllelesLocationGenome BuildSource
rs13397G/AchrX: 15398279738dbsnp146
rs13397G/A chrX: 153248248 37dbsnp146_grch37
1kg_X_152901442A/G chrX: 153982797 38ImmunoChip
1kg_X_152901442A/G chrX: 153248248 37ImmunoChip
1kg_X_152901442A/G chrX: 152901442 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs3185915rs13397rs13397106
rs17336704rs13397rs13397123

Criteria

rs13397 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs13397 as derived from dbSNP:
  • in 5prime gene region
  • has synonymous
  • has reference
Gene(s) at location of variation:  TMEM187 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs13397, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.