Overview

IDAllelesLocationGenome BuildSource
rs1393350G/Achr11: 8927787838dbsnp146
rs1393350G/A chr11: 89011046 37dbsnp146_grch37
rs1393350A/G chr11: 89277878 38ImmunoChip
rs1393350A/G chr11: 89011046 37ImmunoChip
rs1393350A/G chr11: 88650694 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17800907rs1393350rs1393350123
rs56750720rs1393350rs1393350130

Criteria

rs1393350 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs1393350 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  TYR 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs1393350, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.