Overview

IDAllelesLocationGenome BuildSource
rs1456896C/Tchr7: 5026486538dbsnp146
rs1456896C/T chr7: 50304461 37dbsnp146_grch37
imm_7_50275007A/G chr7: 50264865 38ImmunoChip
imm_7_50275007A/G chr7: 50304461 37ImmunoChip
imm_7_50275007A/G chr7: 50275007 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60053640rs1456896rs1456896130
rs9656606rs1456896rs1456896120
rs117925183rs1456896rs1456896132
rs10343417rs1456896rs1456896120

Criteria

rs1456896 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs1456896 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs1456896, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.