Overview

IDAllelesLocationGenome BuildSource
rs151234G/Cchr16: 2849433938dbsnp146
rs151234G/C chr16: 28505660 37dbsnp146_grch37
imm_16_28413161C/G chr16: 28494339 38ImmunoChip
imm_16_28413161C/G chr16: 28505660 37ImmunoChip
imm_16_28413161C/G chr16: 28413161 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs151319rs151234rs15123487
rs240711rs151319rs15123485

Criteria

rs151234 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs151234 as derived from dbSNP:
  • in 5prime gene region
  • in intron
Gene(s) at location of variation:  APOBR  NPIPB8 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs151234, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.