Overview

IDAllelesLocationGenome BuildSource
rs17309827T/Gchr6: 343308438dbsnp146
rs17309827T/G chr6: 3433318 37dbsnp146_grch37
rs17309827A/C chr6: 3433084 38ImmunoChip
rs17309827A/C chr6: 3433318 37ImmunoChip
rs17309827A/C chr6: 3378317 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs59604773rs17309827rs17309827130
rs56564175rs17309827rs17309827130

Criteria

rs17309827 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs17309827 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  SLC22A23 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs17309827, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.