Overview

IDAllelesLocationGenome BuildSource
rs17388568G/Achr4: 12240820738dbsnp146
rs17388568G/A chr4: 123329362 37dbsnp146_grch37
imm_4_123548812T/C chr4: 122408207 38ImmunoChip
imm_4_123548812T/C chr4: 123329362 37ImmunoChip
imm_4_123548812T/C chr4: 123548812 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs61164551rs17388568rs17388568130

Criteria

rs17388568 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs17388568 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  ADAD1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs17388568, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.