Overview

IDAllelesLocationGenome BuildSource
rs1843938G/Achr7: 307340038dbsnp146
rs1843938G/A chr7: 3113034 37dbsnp146_grch37
rs1843938T/C chr7: 3073400 38ImmunoChip
rs1843938T/C chr7: 3113034 37ImmunoChip
rs1843938T/C chr7: 3079560 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs59114061rs1843938rs1843938130
rs10353262rs1843938rs1843938120

Criteria

rs1843938 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs1843938 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs1843938, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.