Overview

IDAllelesLocationGenome BuildSource
rs2062305G/Achr13: 4247874438dbsnp146
rs2062305G/A chr13: 43052880 37dbsnp146_grch37
1kg_13_41950880A/G chr13: 42478744 38ImmunoChip
1kg_13_41950880A/G chr13: 43052880 37ImmunoChip
1kg_13_41950880A/G chr13: 41950880 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17536064rs2062305rs2062305123
rs386555823rs2062305rs2062305142

Criteria

rs2062305 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs2062305 as derived from dbSNP:
  • in intron

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2062305, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.