Overview

IDAllelesLocationGenome BuildSource
rs2283792T/Gchr22: 2177683638dbsnp146
rs2283792T/G chr22: 22131125 37dbsnp146_grch37
rs2283792T/G chr22: 21776836 38ImmunoChip
rs2283792T/G chr22: 22131125 37ImmunoChip
rs2283792T/G chr22: 20461125 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17759640rs2283792rs2283792123
rs56499226rs2283792rs2283792130
rs61647188rs2283792rs2283792130

Criteria

rs2283792 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs2283792 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  MAPK1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2283792, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.