Overview

IDAllelesLocationGenome BuildSource
rs2293152G/A,C,Tchr17: 4232951138dbsnp146
rs2293152G/A,C,T chr17: 40481529 37dbsnp146_grch37
imm_17_37735055C/G chr17: 42329511 38ImmunoChip
imm_17_37735055C/G chr17: 40481529 37ImmunoChip
imm_17_37735055C/G chr17: 37735055 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17886120rs2293152rs2293152126
rs60162161rs2293152rs2293152130

Criteria

rs2293152 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs2293152 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  STAT3 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2293152, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.