Overview

IDAllelesLocationGenome BuildSource
rs2425752T/Cchr20: 4607348138dbsnp146
rs2425752T/C chr20: 44702120 37dbsnp146_grch37
rs2425752A/G chr20: 46073481 38ImmunoChip
rs2425752A/G chr20: 44702120 37ImmunoChip
rs2425752A/G chr20: 44135527 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs16991054rs2425752rs2425752123
rs59547093rs2425752rs2425752130

Criteria

rs2425752 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs2425752 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  NCOA5 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2425752, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.