Overview

IDAllelesLocationGenome BuildSource
rs2664170G/AchrX: 15471732738dbsnp146
rs2664170G/A chrX: 153945602 37dbsnp146_grch37
1kg_X_153598796A/G chrX: 154717327 38ImmunoChip
1kg_X_153598796A/G chrX: 153945602 37ImmunoChip
1kg_X_153598796A/G chrX: 153598796 36ImmunoChip
rs2664170T/C chrX: 154717327 38ImmunoChip
rs2664170T/C chrX: 153945602 37ImmunoChip
rs2664170T/C chrX: 153598796 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs57416102rs2664170rs2664170130

Criteria

rs2664170 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs2664170 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  GAB3 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2664170, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.