Overview

IDAllelesLocationGenome BuildSource
rs2700987C/Achr7: 3734663338dbsnp146
rs2700987C/A chr7: 37386237 37dbsnp146_grch37
1kg_7_37352762A/C chr7: 37346633 38ImmunoChip
1kg_7_37352762A/C chr7: 37386237 37ImmunoChip
1kg_7_37352762A/C chr7: 37352762 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17171001rs2700987rs2700987123
rs10337623rs2700987rs2700987120
rs58092061rs2700987rs2700987130

Criteria

rs2700987 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs2700987 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  ELMO1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2700987, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.