Overview

IDAllelesLocationGenome BuildSource
rs27290G/Achr5: 9701438438dbsnp146
rs27290G/A chr5: 96350088 37dbsnp146_grch37
imm_5_96375844A/G chr5: 97014384 38ImmunoChip
imm_5_96375844A/G chr5: 96350088 37ImmunoChip
imm_5_96375844A/G chr5: 96375844 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60518752rs27290rs27290130
rs386572781rs27290rs27290142
rs3797789rs27290rs27290108
rs56425992rs27290rs27290130
rs60093645rs27290rs27290130

Criteria

rs27290 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs27290 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  LNPEP 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs27290, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.