Overview

IDAllelesLocationGenome BuildSource
rs2732549G/Achr11: 3506685238dbsnp146
rs2732549G/A chr11: 35088399 37dbsnp146_grch37
1kg_11_35044975A/G chr11: 35066852 38ImmunoChip
1kg_11_35044975A/G chr11: 35088399 37ImmunoChip
1kg_11_35044975A/G chr11: 35044975 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs59642910rs2732549rs2732549130
rs386572856rs2732549rs2732549142

Criteria

rs2732549 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs2732549 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs2732549, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.