Overview

IDAllelesLocationGenome BuildSource
rs2816316C/Achr1: 19256768338dbsnp146
rs2816316C/A chr1: 192536813 37dbsnp146_grch37
imm_1_190803436T/G chr1: 192567683 38ImmunoChip
imm_1_190803436T/G chr1: 192536813 37ImmunoChip
imm_1_190803436T/G chr1: 190803436 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60598391rs2816316rs2816316130
rs12734298rs2816316rs2816316123

Criteria

rs2816316 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs2816316 as derived from dbSNP:
  • in intron

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2816316, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.