Overview

IDAllelesLocationGenome BuildSource
rs2823286G/Achr21: 1544561938dbsnp146
rs2823286G/A chr21: 16817938 37dbsnp146_grch37
imm_21_15739809A/G chr21: 15445619 38ImmunoChip
imm_21_15739809A/G chr21: 16817938 37ImmunoChip
imm_21_15739809A/G chr21: 15739809 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs58207372rs2823286rs2823286130
rs17209284rs2823286rs2823286123

Criteria

rs2823286 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs2823286 as derived from dbSNP:
  • in 5prime gene region

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs2823286, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.