Overview

IDAllelesLocationGenome BuildSource
rs3087243G/Achr2: 20387419638dbsnp146
rs3087243G/A chr2: 204738919 37dbsnp146_grch37
imm_2_204447164A/G chr2: 203874196 38ImmunoChip
imm_2_204447164A/G chr2: 204738919 37ImmunoChip
imm_2_204447164A/G chr2: 204447164 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs57552006rs3087243rs3087243130
rs57994510rs3087243rs3087243130
rs56520936rs3087243rs3087243130

Criteria

rs3087243 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs3087243 as derived from dbSNP:
  • in 3prime gene region
Gene(s) at location of variation:  CTLA4 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs3087243, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.