Overview

IDAllelesLocationGenome BuildSource
rs3761959C/Tchr1: 15769948838dbsnp146
rs3761959C/T chr1: 157669278 37dbsnp146_grch37
rs3761959A/G chr1: 157699488 38ImmunoChip
rs3761959A/G chr1: 157669278 37ImmunoChip
rs3761959A/G chr1: 155935902 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs58180253rs3761959rs3761959130

Criteria

No results found

Functional Information

Gene function properties for rs3761959 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  FCRL3 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs3761959, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.