Overview

IDAllelesLocationGenome BuildSource
rs3802826A/Gchr11: 12853654338dbsnp146
rs3802826A/G chr11: 128406438 37dbsnp146_grch37
imm_11_127911648T/C chr11: 128536543 38ImmunoChip
imm_11_127911648T/C chr11: 128406438 37ImmunoChip
imm_11_127911648T/C chr11: 127911648 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60068959rs3802826rs3802826130
rs17533666rs3802826rs3802826123

Criteria

rs3802826 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs3802826 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  ETS1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs3802826, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.