Overview

IDAllelesLocationGenome BuildSource
rs4077515C/Tchr9: 13637204438dbsnp146
rs4077515C/T chr9: 139266496 37dbsnp146_grch37
imm_9_138386317A/G chr9: 136372044 38ImmunoChip
imm_9_138386317A/G chr9: 139266496 37ImmunoChip
imm_9_138386317A/G chr9: 138386317 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs386590804rs4077515rs4077515142
rs60359505rs4077515rs4077515130

Criteria

rs4077515 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs4077515 as derived from dbSNP:
  • has reference
  • has non-synonymous missense
Gene(s) at location of variation:  CARD9 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs4077515, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.