Overview

IDAllelesLocationGenome BuildSource
rs4728142G/Achr7: 12893391338dbsnp146
rs4728142G/A chr7: 128573967 37dbsnp146_grch37
imm_7_128361203A/G chr7: 128933913 38ImmunoChip
imm_7_128361203A/G chr7: 128573967 37ImmunoChip
imm_7_128361203A/G chr7: 128361203 36ImmunoChip
rs4728142T/C chr7: 128933913 38ImmunoChip
rs4728142T/C chr7: 128573967 37ImmunoChip
rs4728142T/C chr7: 128361203 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs61010776rs4728142rs4728142130

Criteria

rs4728142 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs4728142 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs4728142, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.