Overview

IDAllelesLocationGenome BuildSource
rs4802307G/Tchr19: 4634654938dbsnp146
rs4802307G/T chr19: 46849806 37dbsnp146_grch37
rs4802307T/G chr19: 46346549 38ImmunoChip
rs4802307T/G chr19: 46849806 37ImmunoChip
rs4802307T/G chr19: 51541646 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60734794rs4802307rs4802307130
rs52796459rs4802307rs4802307128

Criteria

rs4802307 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs4802307 as derived from dbSNP:
  • in 5prime gene region
Gene(s) at location of variation:  PPP5C 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs4802307, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.