Overview

IDAllelesLocationGenome BuildSource
rs545979C/Tchr18: 5429338038dbsnp146
rs545979C/T chr18: 51819750 37dbsnp146_grch37
rs545979A/G chr18: 54293380 38ImmunoChip
rs545979A/G chr18: 51819750 37ImmunoChip
rs545979A/G chr18: 50073748 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17272807rs545979rs545979123
rs3730821rs545979rs545979108
rs61486881rs545979rs545979130

Criteria

rs545979 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs545979 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  POLI 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs545979, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.