Overview

IDAllelesLocationGenome BuildSource
rs6062504A/G,Tchr20: 6371755538dbsnp146
rs6062504A/G,T chr20: 62348907 37dbsnp146_grch37
rs6062504T/C chr20: 63717555 38ImmunoChip
rs6062504T/C chr20: 62348907 37ImmunoChip
rs6062504T/C chr20: 61819351 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs74312851rs6062504rs6062504131
rs7354447rs6062504rs6062504117

Criteria

rs6062504 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs6062504 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  ZGPAT 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs6062504, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.