Overview

IDAllelesLocationGenome BuildSource
rs629326G/Tchr6: 15907568138dbsnp146
rs629326G/T chr6: 159496713 37dbsnp146_grch37
imm_6_159416701T/G chr6: 159075681 38ImmunoChip
imm_6_159416701T/G chr6: 159496713 37ImmunoChip
imm_6_159416701T/G chr6: 159416701 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17290133rs629326rs629326123
rs60623461rs629326rs629326130

Criteria

rs629326 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs629326 as derived from dbSNP:
  • in intron

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs629326, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.