Overview

IDAllelesLocationGenome BuildSource
rs650258T/Cchr11: 6106481038dbsnp146
rs650258T/C chr11: 60832282 37dbsnp146_grch37
imm_11_60588858T/C chr11: 61064810 38ImmunoChip
imm_11_60588858T/C chr11: 60832282 37ImmunoChip
imm_11_60588858T/C chr11: 60588858 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs12789088rs650258rs650258123
rs56991579rs650258rs650258130
rs17825619rs650258rs650258123

Criteria

rs650258 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs650258 as derived from dbSNP:
  • in intron

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs650258, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.