Overview

IDAllelesLocationGenome BuildSource
rs6677309A/Cchr1: 11653754438dbsnp146
rs6677309A/C chr1: 117080166 37dbsnp146_grch37
imm_1_116881689T/G chr1: 116537544 38ImmunoChip
imm_1_116881689T/G chr1: 117080166 37ImmunoChip
imm_1_116881689T/G chr1: 116881689 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs58233165rs6677309rs6677309130

Criteria

rs6677309 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs6677309 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  CD58 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs6677309, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.