Overview

IDAllelesLocationGenome BuildSource
rs6691768G/Achr1: 6132619138dbsnp146
rs6691768G/A chr1: 61791863 37dbsnp146_grch37
rs6691768A/G chr1: 61326191 38ImmunoChip
rs6691768A/G chr1: 61791863 37ImmunoChip
rs6691768A/G chr1: 61564451 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs58533318rs6691768rs6691768130
rs17265489rs6691768rs6691768123

Criteria

No results found

Functional Information

Gene function properties for rs6691768 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  NFIA 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs6691768, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.