Overview

IDAllelesLocationGenome BuildSource
rs6881706G/Tchr5: 3587905438dbsnp146
rs6881706G/T chr5: 35879156 37dbsnp146_grch37
imm_5_35914913A/C chr5: 35879054 38ImmunoChip
imm_5_35914913A/C chr5: 35879156 37ImmunoChip
imm_5_35914913A/C chr5: 35914913 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17375524rs6881706rs6881706123
rs61597771rs6881706rs6881706130

Criteria

rs6881706 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs6881706 as derived from dbSNP:
  • in 3prime utr
Gene(s) at location of variation:  IL7R 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs6881706, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.