Overview

IDAllelesLocationGenome BuildSource
rs689A/Tchr11: 216099438dbsnp146
rs689A/T chr11: 2182224 37dbsnp146_grch37
imm_11_2138800T/A chr11: 2160994 38ImmunoChip
imm_11_2138800T/A chr11: 2182224 37ImmunoChip
imm_11_2138800T/A chr11: 2138800 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs3842742rs689rs689108
rs56700675rs689rs689130

Criteria

rs689 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs689 as derived from dbSNP:
  • in intron
  • in 5prime utr
Gene(s) at location of variation:  INS-IGF2  INS 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs689, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.