Overview

IDAllelesLocationGenome BuildSource
rs6906021T/Cchr6: 3265853438dbsnp146
rs6906021T/C chr6: 32626311 37dbsnp146_grch37

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17211734rs6906021rs6906021126
rs9273365rs6906021rs6906021119
rs112193564rs78356336rs6906021135
rs78356336rs6906021rs6906021136
rs35912164rs6906021rs6906021127
rs112388765rs78356336rs6906021135
rs112935615rs6906021rs6906021136

Criteria

rs6906021 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs6906021 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs6906021, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.