Overview

IDAllelesLocationGenome BuildSource
rs6916742T/Cchr6: 3248541438dbsnp146
rs6916742T/C chr6: 32453191 37dbsnp146_grch37

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs117665236rs114206369rs6916742132
rs112131939rs6916742rs6916742135
rs114206369rs6916742rs6916742137
rs527369852rs6916742rs6916742144

Criteria

rs6916742 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs6916742 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs6916742, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.