Overview

IDAllelesLocationGenome BuildSource
rs6920220G/Achr6: 13768536738dbsnp146
rs6920220G/A chr6: 138006504 37dbsnp146_grch37
imm_6_138048197T/C chr6: 137685367 38ImmunoChip
imm_6_138048197T/C chr6: 138006504 37ImmunoChip
imm_6_138048197T/C chr6: 138048197 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17264367rs6920220rs6920220123
rs58273351rs6920220rs6920220130
rs57269942rs6920220rs6920220130
rs56495515rs6920220rs6920220130

Criteria

rs6920220 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs6920220 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs6920220, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.