Overview

IDAllelesLocationGenome BuildSource
rs7200786A/Gchr16: 1108394438dbsnp146
rs7200786A/G chr16: 11177801 37dbsnp146_grch37
imm_16_11085302A/G chr16: 11083944 38ImmunoChip
imm_16_11085302A/G chr16: 11177801 37ImmunoChip
imm_16_11085302A/G chr16: 11085302 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60755320rs7200786rs7200786130

Criteria

rs7200786 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs7200786 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  CLEC16A 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs7200786, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.