Overview

IDAllelesLocationGenome BuildSource
rs7221109T/Cchr17: 4061403438dbsnp146
rs7221109T/C chr17: 38770286 37dbsnp146_grch37
imm_17_36023812A/G chr17: 40614034 38ImmunoChip
imm_17_36023812A/G chr17: 38770286 37ImmunoChip
imm_17_36023812A/G chr17: 36023812 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs57844840rs7221109rs7221109130
rs17636256rs7221109rs7221109123
rs56916202rs7221109rs7221109130
rs56580868rs7221109rs7221109130

Criteria

rs7221109 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs7221109 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs7221109, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.