Overview

IDAllelesLocationGenome BuildSource
rs727088G/Achr18: 6986320338dbsnp146
rs727088G/A chr18: 67530439 37dbsnp146_grch37
imm_18_65681419A/G chr18: 69863203 38ImmunoChip
imm_18_65681419A/G chr18: 67530439 37ImmunoChip
imm_18_65681419A/G chr18: 65681419 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs57004771rs727088rs727088130

Criteria

rs727088 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs727088 as derived from dbSNP:
  • in 3prime utr
Gene(s) at location of variation:  CD226 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs727088, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.