Overview

IDAllelesLocationGenome BuildSource
rs7522462G/Achr1: 20091246738dbsnp146
rs7522462G/A chr1: 200881595 37dbsnp146_grch37
imm_1_199148218T/C chr1: 200912467 38ImmunoChip
imm_1_199148218T/C chr1: 200881595 37ImmunoChip
imm_1_199148218T/C chr1: 199148218 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60578997rs7522462rs7522462130

Criteria

rs7522462 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs7522462 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  C1orf106 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs7522462, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.