Overview

IDAllelesLocationGenome BuildSource
rs759648A/Cchr8: 12814669938dbsnp146
rs759648A/C chr8: 129158945 37dbsnp146_grch37
imm_8_129228127A/C chr8: 128146699 38ImmunoChip
imm_8_129228127A/C chr8: 129158945 37ImmunoChip
imm_8_129228127A/C chr8: 129228127 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs57225270rs759648rs759648130
rs74305926rs759648rs759648131
rs111169172rs759648rs759648142

Criteria

rs759648 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs759648 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs759648, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.