Overview

IDAllelesLocationGenome BuildSource
rs763361T/A,Cchr18: 6986440638dbsnp146
rs763361T/A,C chr18: 67531642 37dbsnp146_grch37
imm_18_65682622A/G chr18: 69864406 38ImmunoChip
imm_18_65682622A/G chr18: 67531642 37ImmunoChip
imm_18_65682622A/G chr18: 65682622 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17800796rs763361rs763361123
rs1790587rs763361rs76336192
rs52822910rs763361rs763361128
rs57176311rs763361rs763361130

Criteria

rs763361 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs763361 as derived from dbSNP:
  • has reference
  • has non-synonymous missense
Gene(s) at location of variation:  CD226 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs763361, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.